Package: MicrobTiSDA
Title: Microbiome Time-Series Data Analysis
Version: 0.1.0
Authors@R: 
    person("Shijia", "Li", email = "s.li2@uva.nl", role = c("aut", "cre"),comment = c(ORCID = "0009-0006-6827-5344"))
Description: Provides tools specifically designed for analyzing
        longitudinal microbiome data. This tool integrates seven
        functional modules, providing a systematic framework for
        microbiome time-series analysis. For more details on inferences
        involving interspecies interactions see Fisher (2014)
        <doi:10.1371/journal.pone.0102451>. Details on this package are
        also described in an unpublished manuscript.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
URL: https://github.com/Lishijiagg/MicrobTiSDA
BugReports: https://github.com/Lishijiagg/MicrobTiSDA/issues
Imports: caret, cluster, dplyr, ggdendro, ggplot2, ggraph, MASS, mgcv,
        plyr, pracma, randomForest, reshape2, scales, splines, stats,
        tibble, tidygraph, tidyr, vegan, visNetwork
Depends: R (>= 3.5)
LazyData: true
LazyDataCompression: xz
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libuv1-dev libxml2-dev
Repository: https://lishijiagg.r-universe.dev
Date/Publication: 2025-09-29 16:36:59 UTC
RemoteUrl: https://github.com/lishijiagg/microbtisda
RemoteRef: HEAD
RemoteSha: 425b709f3700469c4942614a6eaa4cd60913dc0a
NeedsCompilation: no
Packaged: 2026-10-24 08:08:41 UTC; root
Author: Shijia Li [aut, cre] (ORCID: <https://orcid.org/0009-0006-6827-5344>)
Maintainer: Shijia Li <s.li2@uva.nl>